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In normal fertilization, the the head of a sperm binds to the egg and releases the contents of a structure known as the acrosome. However, some males have otherwise normal sperm that are unable to properly carry out this process, leading to sub- or infertility due to impaired acrosome reaction. Very little is known about the genetics of male fertility. One study of 7 horses with known IAR, 87 known fertile stallions, and 171 male horses of unknown fertility status found an association with two SNPs in the FKBP6 gene. All 7 case stallions had genotype A/A for both, as compared to only 2 known fertile stallions and 3 unknown fertility males. The authors noted that fertility was defined as having at least one foal, though even males with IAR can rarely produce offspring.
FKBP6 is a binding protein involved in replication of sperm and possibly fertilization. Though not much is known of its specific actions, mouse and rat mutants are unable to produce sperm, and human variants have been associated with impairments in sperm production. This gene is only expressed in males, and expression has only been detected in testis and ejaculate. The two mutations (IAR1, IAR2) do not appear to alter the structure of FKBP6, though they may play a role in its regulation.
Publications
Raudsepp T et al., “Genome-wide association study implicates testis-sperm specific FKBP6 as a susceptibility locus for impaired acrosome reaction in stallions.” (2012) PLoS Genet. 8: e1003139. PMID: 23284302
EZ Guide: What do my test results mean? IAR/Subfertility Test Key
If -/-, -/+ One IAR Subfertility allele detected - NO KNOWN EFFECT
If -/+, -/+ Two IAR Subfertiliy alleles detected - NO KNOWN EFFECT
If +/+, +/- Three IAR Subfertility alleles detected - NO KNOWN EFFECT
If +/+, +/+ Four IAR Subfertility alleles detected - MAY BE AFFECTED
(MALES/STALLIONS ONLY)
(POSSIBLE FERTILITY ISSUE IN STALLIONS, MAY DISPLAY LOW RATE OF FOAL PRODUCTION)